Glyma11g38180 - SoyBase

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Report for Sequence Feature Glyma11g38180

Feature Type:	gene_model
Chromosome:	Gm11
Start:	39131601
stop:	39134001
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g38180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65170	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr5:26041218-26042306 FORWARD LENGTH=362	SoyBase	E_val: 9.00E-24	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1LNL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNL4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6AVF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q6AVF5_ORYSJ	SoyBase	E_val: 7.00E-09	ISS

Expression Patterns of Glyma11g38180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g38180

Paralog	Evidence	Comments
Glyma18g02140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g38180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g239600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g38180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g38180

Limit To All Plant Sequences

>Glyma11g38180.1   sequence type=CDS   gene model=Glyma11g38180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGGGTAACAGTGGGAGTATGCAATCTTCCAGCACCGCCGGTGATGAAGAGTACGATTCACGCGCCGACCCATCTTTGTCGTCATCAATCTCTGCGTTCTTTAATAGTAACTCCCATCCTTCAGCTCCACCACAACCAACAACGTTAACAAACCACGTTGGTCCTCCTTTCTCTACTCAGCACCACCACGTGTTCGACCCTTTATCATCCAATTACTTGGATCCGACACAAAGATCGCCGCAATCAAACCAAATCCTCAACCTCGACATGGTGCGGTCCAAGGTTGCCGCCAGATCCGGACCCGATTTTAGCTCCTTCATACCTTCATCTTCCCCACACAACAACAACAACCAAGCTTTTCTGTTAACTCAATTGGGAGGAGGAGGAGTTAACAACGTTGGTGCTTTTCCCAGTACCACTCTCCCTCCAGAAAGTGGAGGAGGCGGATTAGTAATGAATGAACAAGTAAACAGTAGCAACACCAACAAAAACATGGTTCGAAACCCGAAGAAAAGGTCAAGAGCTTCTAGGCGTGCACCCACCACTGTTCTCACTACGGACACCACGAATTTCCGAGCCATGGTTCAGGAATTCACTGGCATCCCAGCACCTCCTTTCACTTCCTCCTCCTCGTCTTTCCCAAGAACAAGGTTAGATCTCTTTGCCACCTCTAATGCTTCTTCTTCATCCATTATTAGAGAACAAACACCTTCTTATCTTCTTCGCCCCTTTGCACACAAAGTCCAAGCTCAAGTACCTTCTTCAATCCCACCACCCTCTTCCTTTCAACCCATGTTGAACAACTACCACCACCACCACCACCAGCATAACCCAATTCTCAGCTTCCAATCCATTCTCCAACCGCATCAACTCATTGGTTCTAAAACTCAACAACAACCCTCCTTGGAAATACCGCCTAGTGCTCTTGGGTTGGAGGAATTAGGATTGAACCATGCTCATCATCAAAACATCAACATGCGTTCGTCTTCATCGGATGGAACATTGTCAAGGGTCAACAACGACAATAACAACATGCGTGGTCCTTCGGCAGATTGGGCCCAGGCCCAGGCCCAAAGAATTGATAACAATGATGGAGGACTTTTGGGGTCTCTTACTGGTGCCACCTTAAACTACAGAAGCAATATTGTTTCGGATCAGCGAGTCAAGGTTACTAATAATTCGGATTTTCATGGAGAAAAAGGACCGGAATGTGTTGTGGCTGTACGAAGCGAAGCTATATACGAATTAGAATCCTGGAGGGTTTTCGTTTCGACGTACGTTTGTTTCATCGTAATTTGTGTCTCTATTTGGTAA

Predicted protein sequences of Glyma11g38180

Limit To All Plant Sequences

>Glyma11g38180.1   sequence type=predicted peptide   gene model=Glyma11g38180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSGNSGSMQSSSTAGDEEYDSRADPSLSSSISAFFNSNSHPSAPPQPTTLTNHVGPPFSTQHHHVFDPLSSNYLDPTQRSPQSNQILNLDMVRSKVAARSGPDFSSFIPSSSPHNNNNQAFLLTQLGGGGVNNVGAFPSTTLPPESGGGGLVMNEQVNSSNTNKNMVRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTSSSSSFPRTRLDLFATSNASSSSIIREQTPSYLLRPFAHKVQAQVPSSIPPPSSFQPMLNNYHHHHHQHNPILSFQSILQPHQLIGSKTQQQPSLEIPPSALGLEELGLNHAHHQNINMRSSSSDGTLSRVNNDNNNMRGPSADWAQAQAQRIDNNDGGLLGSLTGATLNYRSNIVSDQRVKVTNNSDFHGEKGPECVVAVRSEAIYELESWRVFVSTYVCFIVICVSIW*

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